Department of Biological Sciences: Leading the way to Prominence
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Graduate Student Publications

Recent Publications

Current Students
Student Advisor Publications
Adam Aguiar Robert Sikes DeGraff DJ, Aguiar AA, Sikes RA. Evidence for IGFBP-2 as a key player in prostate cancer progression and development of osteosclerotic lesions. Am J Translational Res. 2009;1(2):115–130.
Melissa Bonner Eric Kmiec Bonner MA, Naik UP. Cytoplasmic binding partners of the platelet integrin alphaIIb beta3. Front Biosci. 2007;12:2038–2049.
Qian (Cynthia) Chen Robert Sikes DeGraff DJ, Malik M, Chen Q, et al. Hormonal regulation of IGFBP-2 proteolysis is attenuated with progression to androgen insensitivity in the LNCaP progression model. J Cell Physiol. 2007;213(1):261–268.
Brian Danysh Melinda Duncan Danysh BP, Duncan MK. The lens capsule. Exp Eye Res. 2009;88(2):151–164.
Danysh BP, Czymmek KJ, Olurin PT, Sivak JG, Duncan MK. Contributions of mouse genetic background and age on anterior lens capsule thickness. Anat Rec (Hoboken). 2008;291(12):1619–1627.
Jennifer Illuzzi Eric Kmiec Illuzzi J, Yerkes S, Parekh-Olmedo H, Kmiec EB. DNA breakage and induction of DNA damage response proteins precede the appearance of visible mutant huntingtin aggregates. J Neurosci Res. 2009;87(3):733–747.
John Kostyak Ulhas Naik Kostyak JC, Naik UP. Megakaryopoiesis: transcriptional insights into megakaryocyte maturation. Front Biosci. 2007;12:2050–2062.
Michelle Lucey Kenneth van Golen Lucey MM, Wang Y, Bustin M, Duncan MK. Differential expression of the HMGN family of chromatin proteins during ocular development. Gene Expr Patterns. 2008;8(6):433–437.
Manisha Malik Randall Duncan DeGraff DJ, Malik M, Chen Q, et al. Hormonal regulation of IGFBP-2 proteolysis is attenuated with progression to androgen insensitivity in the LNCaP progression model. J Cell Physiol. 2007;213(1):261–268.
Fayth Miles Robert Sikes Miles FL, Pruitt FL, van Golen KL, Cooper CR. Stepping out of the flow: capillary extravasation in cancer metastasis. Clin Exp Metastasis. 2008;25(4):305–324.
DeGraff DJ, Miles FL, Gomes RR, Sikes RA. Small animal models for the study of cancer in bone. In: Bronner F, Farach-Carson MC, eds. Topics in Bone Biology, Bone and Cancer. Vol. 5.; 2008:181–204.
Chung S-W, Miles FL, Sikes RA, Cooper CR, Farach-Carson MC, Ogunnaike BA. Quantitative modeling and analysis of the transforming growth factor beta signaling pathway. Biophys J. 2009;96(5):1733–1750.
Deepika Vuppalanchi Jeffery Twiss Merianda TT, Lin AC, Lam JSY, et al. A functional equivalent of endoplasmic reticulum and Golgi in axons for secretion of locally synthesized proteins. Mol Cell Neurosci. 2009;40(2):128–142.
Yudin D, Hanz S, Yoo S, et al. Localized regulation of axonal RanGTPase controls retrograde injury signaling in peripheral nerve. Neuron. 2008;59(2):241–252.
Chang JH, Vuppalanchi D, van Niekerk E, Trepel JB, Schanen NC, Twiss JL. PC12 cells regulate inducible cyclic AMP (cAMP) element repressor expression to differentially control cAMP response element-dependent transcription in response to nerve growth factor and cAMP. J Neurochem. 2006;99(6):1517–1530.
Matthew Weitzman Ulhas Naik Weitzman M, Bayley EB, Naik UP. Robo4: A guidance receptor that regulates angiogenesis. Cell Adh Migr. 2008;2(4):220–222.
Sarah Yerkes Eric Kmiec Illuzzi J, Yerkes S, Parekh-Olmedo H, Kmiec EB. DNA breakage and induction of DNA damage response proteins precede the appearance of visible mutant huntingtin aggregates. J Neurosci Res. 2009;87(3):733–747.
Recent Graduates
Student Advisor Publications
Anissa Brown Mary C. Farach-Carson Brown AJ, Alicknavitch M, D'Souza SS, et al. Heparanase expression and activity influences chondrogenic and osteogenic processes during endochondral bone formation. Bone. 2008;43(4):689–699.
Farach-Carson MC, Brown AJ, Lynam M, Safran JB, Carson DD. A novel peptide sequence in perlecan domain IV supports cell adhesion, spreading and FAK activation. Matrix Biol. 2008;27(2):150–160.
Stephanie Callahan Eric Kmiec DiMatteo D, Callahan S, Kmiec EB. Genetic conversion of an SMN2 gene to SMN1: a novel approach to the treatment of spinal muscular atrophy. Exp Cell Res. 2008;314(4):878–886.
Vesselina Cooke Ulhas Naik Shao M, Ghosh A, Cooke VG, Naik UP, Martin-DeLeon PA. JAM-A is present in mammalian spermatozoa where it is essential for normal motility. Dev Biol. 2008;313(1):246–255.
Xiaoren Chen Melinda Duncan Chen X, Taube JR, Simirskii VI, Patel TP, Duncan MK. Dual roles for Prox1 in the regulation of the chicken betaB1-crystallin promoter. Invest Ophthalmol Vis Sci. 2008;49(4):1542–1552.
David DeGraff Robert Sikes DeGraff DJ, Miles FL, Gomes RR, Sikes RA. Small animal models for the study of cancer in bone. In: Bronner F, Farach-Carson MC, eds. Topics in Bone Biology, Bone and Cancer. Vol. 5.; 2008:181–204.
DeGraff DJ, Malik M, Chen Q, et al. Hormonal regulation of IGFBP-2 proteolysis is attenuated with progression to androgen insensitivity in the LNCaP progression model. J Cell Physiol. 2007;213(1):261–268.
Cara Dubyk Kenneth van Golen van Golen KL, Ying C, Sequeira L, et al. CCL2 induces prostate cancer transendothelial cell migration via activation of the small GTPase Rac. J Cell Biochem. 2008;104(5):1587–1597.
Sequeira L, Dubyk CW, Riesenberger TA, Cooper CR, van Golen KL. Rho GTPases in PC-3 prostate cancer cell morphology, invasion and tumor cell diapedesis. Clin Exp Metastasis. 2008;25(5):569–579.
Hall CL, Dubyk CW, Riesenberger TA, Shein D, Keller ET, van Golen KL. Type I collagen receptor (alpha2beta1) signaling promotes prostate cancer invasion through RhoC GTPase. Neoplasia. 2008;10(8):797–803.
Julia Engstrom Eric Kmiec Engstrom JU, Kmiec EB. DNA replication, cell cycle progression and the targeted gene repair reaction. Cell Cycle. 2008;7(10):1402–1414.
Ferrara L, Engstrom JU, Schwartz T, Parekh-Olmedo H, Kmiec EB. Recovery of cell cycle delay following targeted gene repair by oligonucleotides. DNA Repair (Amst). 2007;6(10):1529–1535.
Engstrom JU, Kmiec EB. Manipulation of cell cycle progression can counteract the apparent loss of correction frequency following oligonucleotide-directed gene repair. BMC Mol Biol. 2007;8:9.
Ananya Ghosh Ulhas Naik Shao M, Ghosh A, Cooke VG, Naik UP, Martin-DeLeon PA. JAM-A is present in mammalian spermatozoa where it is essential for normal motility. Dev Biol. 2008;313(1):246–255.
Genevieve Griffiths Patricia DeLeon Griffiths GS, Galileo DS, Reese K, Martin-Deleon PA. Investigating the role of murine epididymosomes and uterosomes in GPI-linked protein transfer to sperm using SPAM1 as a model. Mol Reprod Dev. 2008;75(11):1627–1636.
Griffiths GS, Miller KA, Galileo DS, Martin-DeLeon PA. Murine SPAM1 is secreted by the estrous uterus and oviduct in a form that can bind to sperm during capacitation: acquisition enhances hyaluronic acid-binding ability and cumulus dispersal efficiency. Reproduction. 2008;135(3):293–301.
Grigorieva A, Griffiths GS, Zhang H, et al. Expression of SPAM1 (PH-20) in the murine kidney is not accompanied by hyaluronidase activity: evidence for potential roles in fluid and water reabsorption. Kidney Blood Press Res. 2007;30(3):145–155.
Mohamad Hassanein Robert Mason Sireesha GV, Mason RW, Hassanein M, et al. Role of cathepsins in blastocyst hatching in the golden hamster. Mol Hum Reprod. 2008;14(6):337–346.
Hassanein M, Xue F, Seto CT, Mason RW. Development of a specific inhibitor for the placental protease, cathepsin P. Arch Biochem Biophys. 2007;464(2):288–294.
Hassanein M, Korant BD, Lu G, Mason RW. Expression of cathepsin P mRNA, protein and activity in the rat choriocarcinoma cell line, Rcho-1, during giant cell transformation. Placenta. 2007;28(8-9):912–919.
Josh Idjadi Ron Karlson Idjadi JA, Karlson RH. Spatial arrangement of competitors influences coexistence of reef-building corals. Ecology. 2007;88(10):2449–2454.
Jill Lynch Robert Sikes Cooper CR, Graves B, Pruitt F, et al. Novel surface expression of reticulocalbin 1 on bone endothelial cells and human prostate cancer cells is regulated by TNF-alpha. J Cell Biochem. 2008;104(6):2298–2309.
Katie Maguire Eric Kmiec Maguire KK, Kmiec EB. Multiple roles for MSH2 in the repair of a deletion mutation directed by modified single-stranded oligonucleotides. Gene. 2007;386(1-2):107–114.
David Manna Daniel Simmons Wang W, Manna D, Simmons DT. Role of the hydrophilic channels of simian virus 40 T-antigen helicase in DNA replication. J Virol. 2007;81(9):4510–4519.
John O'Connor Daniel Carson O'Connor JC, Farach-Carson MC, Schneider CJ, Carson DD. Coculture with prostate cancer cells alters endoglin expression and attenuates transforming growth factor-beta signaling in reactive bone marrow stromal cells. Mol Cancer Res. 2007;5(6):585–603.
Lynn Opdenaker Mary C. Farach-Carson Opdenaker LM, Farach-Carson MC. Rapamycin selectively reduces the association of transcripts containing complex 5' UTRs with ribosomes in C4-2B prostate cancer cells. J Cell Biochem. 2009;107(3):473–481.
Dan Oristian Catherine Kirn-Safran Oristian DS, Sloofman LG, Zhou X, Wang L, Farach-Carson MC, Kirn-Safran CB. Ribosomal protein L29/HIP deficiency delays osteogenesis and increases fragility of adult bone in mice. J Orthop Res. 2009;27(1):28–35.
Freddie Pruitt Carlton Cooper Cooper CR, Graves B, Pruitt F, et al. Novel surface expression of reticulocalbin 1 on bone endothelial cells and human prostate cancer cells is regulated by TNF-alpha. J Cell Biochem. 2008;104(6):2298–2309.
Miles FL, Pruitt FL, van Golen KL, Cooper CR. Stepping out of the flow: capillary extravasation in cancer metastasis. Clin Exp Metastasis. 2008;25(4):305–324.
Timothy Schwartz Eric Kmiec Schwartz TR, Vasta CA, Bauer TL, Parekh-Olmedo H, Kmiec EB. G-rich oligonucleotides alter cell cycle progression and induce apoptosis specifically in OE19 esophageal tumor cells. Oligonucleotides. 2008;18(1):51–63.
Ferrara L, Engstrom JU, Schwartz T, Parekh-Olmedo H, Kmiec EB. Recovery of cell cycle delay following targeted gene repair by oligonucleotides. DNA Repair (Amst). 2007;6(10):1529–1535.
Schwartz TR, Kmiec EB. Reduction of gene repair by selenomethionine with the use of single-stranded oligonucleotides. BMC Mol Biol. 2007;8:7.
Erna van Niekerk Jeffery Twiss van Niekerk EA, Willis DE, Chang JH, Reumann K, Heise T, Twiss JL. Sumoylation in axons triggers retrograde transport of the RNA-binding protein La. Proc Natl Acad Sci U S A. 2007;104(31):12913–12918.1
Willis DE, van Niekerk EA, Sasaki Y, et al. Extracellular stimuli specifically regulate localized levels of individual neuronal mRNAs. J Cell Biol. 2007;178(6):965–980.
Wang W, van Niekerk E, Willis DE, Twiss JL. RNA transport and localized protein synthesis in neurological disorders and neural repair. Dev Neurobiol. 2007;67(9):1166–1182.
Peng Wang Daniel Carson Wang P, Julian JA, Carson DD. The MUC1 HMFG1 glycoform is a precursor to the 214D4 glycoform in the human uterine epithelial cell line, HES. Biol Reprod. 2008;78(2):290–298.
Weiping Wang Daniel Simmons Wang W, Manna D, Simmons DT. Role of the hydrophilic channels of simian virus 40 T-antigen helicase in DNA replication. J Virol. 2007;81(9):4510–4519.
Wang W, Simmons DT. Simian Virus 40 Large T Antigen Can Specifically Unwind the Central Palindrome at the Origin of DNA Replication. J Virol. 2009;83(7):3312–3322.2

Notes

  1. 2008 Graduate Student Publication Excellence Award winner
  2. 2009 Carsons Graduate Student Publication Excellence Award winner

Recent Ph.D. Dissertations

Student Advisor Dissertation
Anissa Brown Mary C. Farach-Carson Function of heparan sulfate proteoglycans (HSPGs) and heparanase (HPSE) in endochondral bone formation.
Xiaoren Chen Melinda Duncan Biochemistry of Prox1 function.
Vesselina Cooke Ulhas Naik Role of Junctional Adhesion Molecule-A in vascular biology.
David DeGraff Robert Sikes Implications for the androgenic regulation of IGFBP-2 in the development of metastatic and androgen independent prostate cancer.
Julia Engstrom Eric Kmiec Mammalian cell cycle regulates oligonucleotide-mediated repair.
Genevieve Griffiths Patricia DeLeon Investigating the impact and mechanism of vesicular and non-vesicular mediated GPI-linked protein transfer from reproductive luminal fluids to sperm, using SPAM1 as a model.
Mohamad Hassanein Robert Mason Biochemical and functional characterization of a novel placental protease, cathepsin P, in rat trophoblasts.
Katie Maguire Eric Kmiec Targeted gene repair of frameshift mutations: Insights into the mechanism and applications for gene therapy.
John O'Connor Daniel Carson The role of the bone microenvironment in prostate cancer bone metastasis.
Timothy Schwartz Eric Kmiec Therapeutic single-stranded oligonucleotides in gene repair and cancer.
Erna van Niekerk Jeffery Twiss La and SUMO wrestle in regenerating axons.
Weiping Wang Daniel Simmons SV40 large T antigen helicase: Roles of the hydrophilic channels and a newly identified unwinding activity.
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